WebNov 8, 2024 · diffloop: diffloop: A package for differential DNA loop calling from... dim-loops-method: See dimensions of loops object; featureTest: Combined association test for all loops in a defined region; filterLoops: Filter loops; filterSpanningLoops: Retain loops spanning some genomic feature; geneinfo: Human/mouse exon locations WebNov 8, 2024 · The diffloop package contains a suite of tools and S4 data objects to efficiently facilitate the analysis of ChIA-PET datasets. Key features include differential loop calling, visualization of looping in regions, quality-control metrics, and principal component analysis across experiments.
diffloop: Identifying differential DNA loops from chromatin …
WebJun 19, 2024 · ggrepel: Automatically Position Non-Overlapping Text Labels with 'ggplot2'. Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points. Kamil Slowikowski [aut, cre], Alicia Schep [ctb], Sean Hughes [ctb], Saulius Lukauskas [ctb], Jean-Olivier … WebTo determine what diff viewer is used, the script requires either the 'diff.tool' or 'merge.tool' configuration option to be set. This script is compatible with most common forms used to … gods of jade and shadow pdf free
diffloop package - RDocumentation
WebCone programs. diffcp differentiates through a primal-dual cone program pair. The primal problem must be expressed as. minimize c'x subject to Ax + s = b s in K. where x and s … WebApr 14, 2024 · Here we propose DIFFPOOL, a differentiable graph pooling module that can generate hierarchical representations of graphs and can be combined with various graph neural network architectures in an end-to … Webosx-64v1.8.0. noarchv1.22.0. conda install. To install this package run one of the following:conda install -c bioconda bioconductor-diffloop. conda install -c … gods of ink new york